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storage of genomic data","documentationUrl":"http://samtools.github.io/hts-specs/CRAMv3.pdf","category":"FileFormat","status":"Approved"},{"id":"crypt4gh","name":"Crypt4GH","artifact":"crypt4gh","summary":"Encrypt sensitive genomic data in transit and at rest","documentationUrl":"http://samtools.github.io/hts-specs/crypt4gh.pdf","category":"FileFormat","status":"Approved"},{"id":"drs","name":"Data Repository Service","abbreviation":"DRS","artifact":"drs","summary":"Access genomic datasets regardless of the repository in which they are stored or managed","documentationUrl":"https://github.com/ga4gh/data-repository-service-schemas","category":"API","status":"Approved"},{"id":"dsip","name":"Data Security Infrastructure Policy","abbreviation":"DSIP","artifact":"standard","summary":"Recommended security infrastructure and technology for stakeholders in the international genomic data sharing ecosystem.","documentationUrl":"https://github.com/ga4gh/data-security/blob/master/DSIP/DSIP_v4.0.md","category":"Policy","status":"Approved"},{"id":"duo","name":"Data Use Ontology","abbreviation":"DUO","artifact":"standard","summary":"Semantically tag genomic datasets to control access based on researcher authorization level or intended use","documentationUrl":"https://github.com/EBISPOT/DUO","category":"Schema","status":"Approved"},{"id":"family-history","name":"Family History Tools Inventory","artifact":"standard","summary":"Catalogue of family history tools","documentationUrl":"https://drive.google.com/file/d/0B9MKz0Tq6z3QeXF0U1lUTW9XREtxdGk0NXo2eTdDZ190cVlB/view","category":"Schema","status":"Approved"},{"id":"htsget","name":"htsget","artifact":"htsget","summary":"Flexible genomic data retrieval API","documentationUrl":"https://github.com/samtools/hts-specs/blob/master/htsget.md","category":"API","status":"Approved"},{"id":"passports","name":"Passports","artifact":"passports","summary":"Easily communicate researcher data access authorizations across multiple organizations","documentationUrl":"https://github.com/ga4gh-duri/ga4gh-duri.github.io/blob/master/researcher_ids/ga4gh_passport_v1.md#ga4gh-passport","category":"API","status":"Approved"},{"id":"pedigree","name":"Pedigree","artifact":"pedigree","summary":"Unambiguous, computable pedigree and family information","documentationUrl":"https://github.com/ga4gh-cp/pedigree","category":"FileFormat","status":"Proposed"},{"id":"phenopackets","name":"Phenopackets","artifact":"phenopackets","summary":"Standardized data models for capturing clinical and phenotypic information","documentationUrl":"https://phenopackets-schema.readthedocs.io/en/1.0.0/index.html","category":"Schema","status":"Approved"},{"id":"psp","name":"Privacy and Security Policy","artifact":"standard","summary":"Promotes the sharing of genomic and health-related data in a way that protects the confidentiality, integrity, and availability of data and services, and the privacy of individuals, families, and communities whose data are shared.","documentationUrl":"https://www.ga4gh.org/wp-content/uploads/GA4GH-Data-Privacy-and-Security-Policy_FINAL-August-2019.pdf","category":"Policy","status":"Approved"},{"id":"refget","name":"Refget","artifact":"refget","summary":"Retrieve genomic reference sequences by vendor-neutral checksum identifier derived from sequence content","documentationUrl":"https://github.com/samtools/hts-specs/blob/master/refget.md","category":"API","status":"Approved"},{"id":"rnaget","name":"RNAget","artifact":"rnaget","summary":"Flexible download of RNAseq expression matrices via REST API","documentationUrl":"https://github.com/ga4gh-rnaseq/schema","category":"API","status":"Approved"},{"id":"sam","name":"Sequence Alignment Map","abbreviation":"SAM/BAM","artifact":"sam","summary":"Specifications for storing next-generation sequencing read data","documentationUrl":"https://samtools.github.io/hts-specs/SAMv1.pdf","category":"FileFormat","status":"Approved"},{"id":"search","name":"Search","artifact":"search","summary":"Search API","documentationUrl":"https://github.com/ga4gh-discovery/ga4gh-discovery-search","category":"API","status":"Proposed"},{"id":"service-info","name":"Service Info","artifact":"service-info","summary":"Extensible endpoint describing service metadata for GA4GH API-based specifications","documentationUrl":"https://github.com/ga4gh-discovery/ga4gh-service-info/blob/develop/README.md","category":"API","status":"Approved"},{"id":"service-registry","name":"Service Registry","artifact":"service-registry","summary":"Lists metadata about other GA4GH services within a network","documentationUrl":"https://github.com/ga4gh-discovery/ga4gh-service-registry/blob/develop/README.md","category":"API","status":"Approved"},{"id":"trs","name":"Tool Registry Service","abbreviation":"TRS","artifact":"trs","summary":"Exchange tools and workflows to analyze, read, and manipulate genomic data","documentationUrl":"https://ga4gh.github.io/tool-registry-service-schemas/","category":"API","status":"Approved"},{"id":"vbt","name":"Variant Benchmarking Tools","artifact":"standard","summary":"Benchmarking methods and tools for accurate assessment of next generation sequencing variant calling","documentationUrl":"https://github.com/ga4gh/benchmarking-tools","category":"Schema","status":"Approved"},{"id":"vcf","name":"Variant Call Format","abbreviation":"VCF","artifact":"vcf","summary":"The specifications for Variant Call Format Files (VCF)","documentationUrl":"https://samtools.github.io/hts-specs/VCFv4.3.pdf","category":"FileFormat","status":"Approved"},{"id":"vr","name":"Variant Representation","abbreviation":"VRS","artifact":"vr","summary":"Standardized data models to precisely exchange genetic variation data across communities","documentationUrl":"https://vr-spec.readthedocs.io/en/1.0/","category":"Schema","status":"Approved"},{"id":"wes","name":"Workflow Execution Service","abbreviation":"WES","artifact":"wes","summary":"Submit and inspect genomic analysis workflow runs","documentationUrl":"https://samtools.github.io/hts-specs/BCFv2_qref.pdf","category":"API","status":"Approved"}]